Analysis Stations

The BIDC hosts a suite of Analysis Stations that can be accessed upon request. These computers feature cutting edge graphics cards capable of fast 3D rendering, high end CPUs with 8 or more cores for multi-threaded processing, and large multi-monitor displays.

Furthermore, BIDC personnel are happy to train, assist, and collaborate with custom data analysis projects. We routinely work with ImageJ/FIJI creating custom macros, Matlab scripting, and Imaris accessing custom Matlab extensions. Experience in coding also extends to Python and Java.

Please follow the Request Usage steps to gain access to our hardware and expertise.

 

Analysis Station 1 (Linux System)

This station is routinely used for collaborative data analysis and is available upon request.  Please contact the BIDC for more information and usage requests.

Operating System: Pop!_OS 19.04, 64-bit
RAM: 128.0 GB
CPU: 32 Cores @ 4.2GHz
GPU: 8GB GeForce RTX 2080 with 2944 CUDA Cores Blower
Storage: 2 SSDs 1TB + 500GB

More information and specifics of our Linux computer build can be found here. 

 

 

Analysis Station 3

Our second workhorse for the BIDC, typical usage includes Imaris, Matlab, and GPU processing.

Operating System: Windows 10 Pro, 64-bit
RAM: KINGSTON 128.0 GB
CPU: Intel Core i9-9960X 16-Core @ 3.1 - 4.4GHz
GPUs: PNY Quadro P4000, 8GB GPU RAM
Storage: 3x 1TB SSDs, 1 6TB HDD
Monitors: Two Dell 24", 1920 x 1200 pixel resolution, LCD Display

More information and specifics of our Analysis Station 3 computer build can be found here.

Installed Software:

7-zip 

Anaconda 
Autodesk 
Cell Profiler 
Cell Profiler-Analyst 
Filezilla 
GraphPad Prism 
HDFView 
Huygens 
Ilastik 
ImageJ / FIJI   
Imaris 9.6 with Filament Module 

 (all previous versions also available)
LAS X (free version) 
LaTeX 
Living Image 
MATLAB R2019b 
MetaMorph 
Micro-Manager 
Microsoft Office 2019 
NetBeans IDE 
NIS-Elements 
Picasa 3 
Python 
QuPath 
R 
Strawberry Perl-Padre
Vim 
Zen 3.1 (Blue edition)