All Publications

Since the BIDC's inception, we have contributed to over 180 peer-reviewed publications. If you have utilized BIDC resources (microscopes, analysis, expertise), please submit the publication to [email protected] to be included in our list.

  1. Bai Y, Wang Y, Kang M, Gabe CM, Srirangapatanam S, Edwards A, Stoller M, Green SJ, Aloni S, Tamura N, et al. Organic Matrix Derived from Host–Microbe Interplay Contributes to Pathological Renal Biomineralization. ACS Nanoscience Au. 2023;3(4):335–346. [http://doi:10.1021/acsnanoscienceau.2c00060]
  2. Caruso JA, Wang X, Murrow LM, Rodriguez CI, Chen-Tanyolac C, Vu L, Chen Y-Y, Gascard P, Gartner ZJ, Kerlikowske K, et al. Loss of PPARγ activity characterizes early protumorigenic stromal reprogramming and dictates the therapeutic window of opportunity. Proceedings of the National Academy of Sciences. 2023;120(42):e2303774120. doi:10.1073/pnas.2303774120
  3. Krishna S, Choudhury A, Keough MB, Seo K, Ni L, Kakaizada S, Lee A, Aabedi A, Popova G, Lipkin B, et al. Glioblastoma remodelling of human neural circuits decreases survival. Nature. 2023;617(7961):599–607. [doi:10.1038/s41586-023-06036-1]
  4. Patel RK, Jaszczak RG, Im K, Carey ND, Courau T, Bunis DG, Samad B, Avanesyan L, Chew NW, Stenske S, et al. Cyclone: an accessible pipeline to analyze, evaluate, and optimize multiparametric cytometry data. Frontiers in Immunology. 2023;14. [https://www.frontiersin.org/articles/10.3389/fimmu.2023.1167241]
  5. Stashko C, Hayward M-K, Northey JJ, Pearson N, Ironside AJ, Lakins JN, Oria R, Goyette M-A, Mayo L, Russnes HG, et al. A convolutional neural network STIFMap reveals associations between stromal stiffness and EMT in breast cancer. Nature Communications. 2023;14(1):3561. [http://doi:10.1038/s41467-023-39085-1]
  6. Tharp Kevin M., Park Sangwoo, Timblin Greg A., Richards Alicia L., Berg Jordan A., Twells Nicholas M., Riley Nicholas M., Peltan Egan L., Shon D. Judy, Stevenson Erica, Tsui Kimberly, Palomba Francesco, Lefebvre Austin E. Y. T., Soens Ross W., Ayad Nadia M.E., ten Hoeve-Scott Johanna, Healy Kevin, Digman Michelle, Dillin Andrew, Bertozzi Carolyn R., Swaney Danielle L., Mahal Lara K., Cantor Jason R., Paszek Matthew J., Weaver Valerie M. The microenvironment dictates glycocalyx construction and immune surveillance. eLife. 2023 [https://doi.org/10.7554/eLife.91281.1]
  7. Zagorulya M, Yim L, Morgan DM, Edwards A, Torres-Mejia E, Momin N, McCreery CV, Zamora IL, Horton BL, Fox JG, et al. Tissue-specific abundance of interferon-gamma drives regulatory T cells to restrain DC1-mediated priming of cytotoxic T cells against lung cancer. Immunity. 2023;56(2):386-405.e10. [doi:10.1016/j.immuni.2023.01.010]
  8. Beppler C, Eichorst J, Marchuk K, Cai E, Castellanos CA, Sriram V, Roybal KT, Krummel MF. Hyperstabilization of T cell microvilli contacts by chimeric antigen receptors. Journal of Cell Biology. 2022;222(3):e202205118. [doi:10.1083/jcb.202205118]
  9. Combes AJ, Samad B, Tsui J, Chew NW, Yan P, Reeder GC, Kushnoor D, Shen A, Davidson B, Barczak AJ, et al. Discovering dominant tumor immune archetypes in a pan-cancer census. Cell. 2022;185(1):184-203.e19. [doi:10.1016/j.cell.2021.12.004]
  10. Rusu I, Mennillo E, Bain JL, Li Z, Sun X, Ly KM, Rosli YY, Naser M, Wang Z, Advincula R, et al. Microbial signals, MyD88, and lymphotoxin drive TNF-independent intestinal epithelial tissue damage. The Journal of Clinical Investigation. 2022;132(5).[doi:10.1172/JCI154993]
  11. You R, Artichoker J, Ray A, Gonzalez Velozo H, Rock DA, Conner KP, Krummel MF. Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy. Cancer Immunology Research. 2022;10(6):698–712. [doi:10.1158/2326-6066.CIR-21-0594]
  12. Bhattacharyya A, Boostanpour K, Bouzidi M, Magee L, Chen TY, Wolters R, Torre P, Pillai SK, Bhattacharya M. IL10 trains macrophage profibrotic function after lung injury. American Journal of Physiology-Lung Cellular and Molecular Physiology. 2022;322(3):L495–L502. [doi:10.1152/ajplung.00458.2021]
  13. Cai E, Beppler C, Eichorst J, Marchuk K, Eastman SW, Krummel MF. T cells use distinct topographical and membrane receptor scanning strategies that individually coalesce during receptor recognition. Proceedings of the National Academy of Sciences. 2022;119(32):e2203247119. [doi:10.1073/pnas.2203247119]
  14. Cautivo KM, Matatia PR, Lizama CO, Mroz NM, Dahlgren MW, Yu X, Sbierski-Kind J, Taruselli MT, Brooks JF, Wade-Vallance A, et al. Interferon gamma constrains type 2 lymphocyte niche boundaries during mixed inflammation. Immunity. 2022;55(2):254-271.e7. doi:10.1016/j.immuni.2021.12.014
  15. Conrad C, Yildiz D, Cleary SJ, Margraf A, Cook L, Schlomann U, Panaretou B, Bowser JL, Karmouty-Quintana H, Li J, et al. ADAM8 signaling drives neutrophil migration and ARDS severity. JCI Insight. 2022;7(3). [doi:10.1172/jci.insight.149870]
  16. Crouch EE, Bhaduri A, Andrews MG, Cebrian-Silla A, Diafos LN, Birrueta JO, Wedderburn-Pugh K, Valenzuela EJ, Bennett NK, Eze UC, et al. Ensembles of endothelial and mural cells promote angiogenesis in prenatal human brain. Cell. 2022;185(20):3753-3769.e18. [http://doi:10.1016/j.cell.2022.09.004]
  17. Kersten K, Hu KH, Combes AJ, Samad B, Harwin T, Ray A, Rao AA, Cai E, Marchuk K, Artichoker J, et al. Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells in cancer. Cancer Cell. 2022;40(6):624-638.e9. doi:10.1016/j.ccell.2022.05.004
  18. Kotas ME, Moore CM, Gurrola JG, Pletcher SD, Goldberg AN, Alvarez R, Yamato S, Bratcher PE, Shaughnessy CA, Zeitlin PL, et al. IL-13–programmed airway tuft cells produce PGE2, which promotes CFTR-dependent mucociliary function. JCI Insight. 7(13):e159832. [http://doi:10.1172/jci.insight.159832]
  19. Rao P, Han DD, Tan K, Mohammadi L, Derakhshandeh R, Navabzadeh M, Goyal N, Springer ML. Comparable Impairment of Vascular Endothelial Function by a Wide Range of Electronic Nicotine Delivery Devices. Nicotine & Tobacco Research. 2022;24(7):1055–1062. [http://doi:10.1093/ntr/ntac019]
  20. Reyes NS, Krasilnikov M, Allen NC, Lee JY, Hyams B, Zhou M, Ravishankar S, Cassandras M, Wang C, Khan I, et al. Sentinel p16INK4a+ cells in the basement membrane form a reparative niche in the lung. Science. 2022;378(6616):192–201. [doi:10.1126/science.abf3326]
  21. Shariati K, Zhang Y, Giubbolini S, Parra R, Liang S, Edwards A, Hejtmancik JF, Ratto GM, Arosio D, Ku G. A Superfolder Green Fluorescent Protein-Based Biosensor Allows Monitoring of Chloride in the Endoplasmic Reticulum. ACS Sensors. 2022;7(8):2218–2224. [http://doi:10.1021/acssensors.2c00626]
  22. Smith SS, Chu D, Qu T, Aggleton JA, Schneider RA. Species-specific sensitivity to TGFβ signaling and changes to the Mmp13 promoter underlie avian jaw development and evolution. Bronner ME, Cheah KSE, editors. eLife. 2022;11:e66005. [http://doi:10.7554/eLife.66005]
  23. Valet C, Magnen M, Qiu L, Cleary SJ, Wang KM, Ranucci S, Grockowiak E, Boudra R, Conrad C, Seo Y, et al. Sepsis promotes splenic production of a protective platelet pool with high CD40 ligand expression. The Journal of Clinical Investigation. 2022 [doi:10.1172/JCI153920]
  24. You R, Artichoker J, Fries A, Edwards AW, Combes AJ, Reeder GC, Samad B, Krummel MF. Active surveillance characterizes human intratumoral T cell exhaustion. The Journal of Clinical Investigation. 2021;131(18). [doi:10.1172/JCI144353].
  25. Pipathsouk A, Brunetti RM, Town JP, Graziano BR, Breuer A, Pellett PA, Marchuk K, Tran N-HT, Krummel MF, Stamou D, et al. The WAVE complex associates with sites of saddle membrane curvature. Journal of Cell Biology. 2021;220(8):e202003086. [doi:10.1083/jcb.202003086]
  26. Boothby IC, Kinet MJ, Boda DP, Kwan EY, Clancy S, Cohen JN, Habrylo I, Lowe MM, Pauli M, Yates AE, et al. Early-life inflammation primes a T helper 2 cell–fibroblast niche in skin. Nature. 2021;599(7886):667–672. doi:10.1038/s41586-021-04044-7
  27. Drain AP, Zahir N, Northey JJ, Zhang H, Huang P-J, Maller O, Lakins JN, Yu X, Leight JL, Alston-Mills BP, et al. Matrix compliance permits NF-κB activation to drive therapy resistance in breast cancer. Journal of Experimental Medicine. 2021;218(5):e20191360. [doi:10.1084/jem.20191360]
  28. Frumm SM, Yu SK, Chang J, Artichoker JA, Scaria SM, Lee KP, Byrnes LE, Sneddon JB, Tward AD. A Hierarchy of Proliferative and Migratory Keratinocytes Maintains the Tympanic Membrane. Cell Stem Cell. 2021;28(2):315-330.e5. [doi:10.1016/j.stem.2020.10.006]
  29. Lopez-Ichikawa M, Vu NK, Nijagal A, Rubinsky B, Chang TT. Neutrophils are important for the development of pro-reparative macrophages after irreversible electroporation of the liver in mice. Scientific Reports. 2021;11(1):14986. [doi:10.1038/s41598-021-94016-8]
  30. Mehta P, Gouirand V, Boda DP, Zhang J, Gearty SV, Zirak B, Lowe MM, Clancy S, Boothby I, Mahuron KM, et al. Layilin Anchors Regulatory T Cells in Skin. The Journal of Immunology. 2021;207(7):1763–1775. [doi:10.4049/jimmunol.2000970]
  31. Somebang K, Rudolph J, Imhof I, Li L, Niemi EC, Shigenaga J, Tran H, Gill TM, Lo I, Zabel BA, et al. CCR2 deficiency alters activation of microglia subsets in traumatic brain injury. Cell Reports. 2021;36(12):109727. [doi:10.1016/j.celrep.2021.109727]
  32. Soygur B, Jaszczak RG, Fries A, Nguyen DH, Malki S, Hu G, Demir N, Arora R, Laird DJ. Intercellular bridges coordinate the transition from pluripotency to meiosis in mouse fetal oocytes. Science Advances. 2021;7(15):eabc6747. [doi:10.1126/sciadv.abc6747]
  33. Walter ND, Born SEM, Robertson GT, Reichlen M, Dide-Agossou C, Ektnitphong VA, Rossmassler K, Ramey ME, Bauman AA, Ozols V, et al. Mycobacterium tuberculosis precursor rRNA as a measure of treatment-shortening activity of drugs and regimens. Nature Communications. 2021;12(1):2899. [doi:10.1038/s41467-021-22833-6]
  34. Wang Y, Bernard A, Comblain F, Yue X, Paillart C, Zhang S, Reiter JF, Vaisse C. Melanocortin 4 receptor signals at the neuronal primary cilium to control food intake and body weight. The Journal of Clinical Investigation. 2021;131(9). [doi:10.1172/JCI142064]
  35. Hu KH, Eichorst JP, McGinnis CS, Patterson DM, Chow ED, Kersten K, Jameson SC, Gartner ZJ, Rao AA, Krummel MF. ZipSeq: barcoding for real-time mapping of single cell transcriptomes. Nature Methods. 2020;17(8):833–843. [doi:10.1038/s41592-020-0880-2]
  36. Boissonnas A, Louboutin F, Laviron M, Loyher P-L, Reboussin E, Barthelemy S, Réaux-Le Goazigo A, Lobsiger CS, Combadière B, Mélik Parsadaniantz S, et al. Imaging resident and recruited macrophage contribution to Wallerian degeneration. Journal of Experimental Medicine. 2020;217(11):e20200471. [doi:10.1084/jem.20200471]
  37. Cassandras M, Wang C, Kathiriya J, Tsukui T, Matatia P, Matthay M, Wolters P, Molofsky A, Sheppard D, Chapman H, et al. Gli1+ mesenchymal stromal cells form a pathological niche to promote airway progenitor metaplasia in the fibrotic lung. Nature Cell Biology. 2020;22(11):1295–1306. [doi:10.1038/s41556-020-00591-9]
  38. Chu D, Nguyen A, Smith SS, Vavrušová Z, Schneider RA. Stable integration of an optimized inducible promoter system enables spatiotemporal control of gene expression throughout avian development. Biology Open. 2020;9(10):bio055343. [doi:10.1242/bio.055343]
  39. Cleary SJ, Kwaan N, Tian JJ, Calabrese DR, Mallavia B, Magnen M, Greenland JR, Urisman A, Singer JP, Hays SR, et al. Complement activation on endothelium initiates antibody-mediated acute lung injury. The Journal of Clinical Investigation. 2020;130(11):5909–5923. [doi:10.1172/JCI138136]
  40. Mallavia B, Liu F, Lefrançais E, Cleary SJ, Kwaan N, Tian JJ, Magnen M, Sayah DM, Soong A, Chen J, et al. Mitochondrial DNA Stimulates TLR9-Dependent Neutrophil Extracellular Trap Formation in Primary Graft Dysfunction. American Journal of Respiratory Cell and Molecular Biology. 2020;62(3):364–372. [doi:10.1165/rcmb.2019-0140OC]
  41. Northey JJ, Barrett AS, Acerbi I, Hayward M-K, Talamantes S, Dean IS, Mouw JK, Ponik SM, Lakins JN, Huang P-J, et al. Stiff stroma increases breast cancer risk by inducing the oncogene ZNF217. The Journal of Clinical Investigation. 2020;130(11):5721–5737. [doi:10.1172/JCI129249]
  42. Looney MR, Headley MB. Live imaging of the pulmonary immune environment. Cell Immunol. 2020;350:103862. [doi:10.1016/j.cellimm.2018.09.007].
  43. Cleary SJ, Hobbs C, Amison RT, Arnold S, O’Shaughnessy BG, Lefrançais E, Mallavia B, Looney MR, Page CP, Pitchford SC. LPS-induced Lung Platelet Recruitment Occurs Independently from Neutrophils, PSGL-1, and P-Selectin. American Journal of Respiratory Cell and Molecular Biology. 2019;61(2):232–243. [doi:10.1165/rcmb.2018-0182OC].
  44. Dahlgren MW, Jones SW, Cautivo KM, et al. "Adventitial Stromal Cells Define Group 2 Innate Lymphoid Cell Tissue Niches." Immunity. 2019;50(3):707‐722.e6. [doi:10.1016/j.immuni.2019.02.002].
  45. Hagerling, C., H. Gonzalez, K. Salari, C.-Y. Wang, C. Lin, I. Robles, M. van Gogh, A. Dejmek, K. Jirström & Z. Werb (2019). Immune effector monocyte - neutrophil cooperation induced by the primary tumor prevents metastatic progression of breast cancer.  Proc. Natl. Acad. Sci. USA. 116(43):21704-21714. [Epub ahead of print 10/7/19]. PMID:31591235; PMCID:[PMC6815161].
  46. Jason Wong, Sara L. Sampson, Hildegarde Bell-Briones, Ann Ouyang, Ann A. Lazar, Jeffrey C. Lotz, Aaron J. Fields. “Nutrient supply and nucleus pulposus cell function: effects of the transport properties of the cartilage endplate and potential implications for intradiscal biologic therapy” Osteoarthritis Cartilage. 2019 Jun; 27(6): 956–964. Published online 2019 Feb 2. [doi: 10.1016/j.joca.2019.01.013].
  47. Jones KB, Furukawa S, Marangoni P, et al. Quantitative Clonal Analysis and Single-Cell Transcriptomics Reveal Division Kinetics, Hierarchy, and Fate of Oral Epithelial Progenitor Cells. Cell Stem Cell. 2019;24(1):183‐192.e8. [doi:10.1016/j.stem.2018.10.015].
  48. Lyu C, Lopez-Ichikawa M, Rubinsky B, Chang TT. Normal and fibrotic liver parenchyma respond differently to irreversible electroporation. HPB. 2019;21(10):1344–1353. doi:10.1016/j.hpb.2019.01.019
  49. Owyong, M., J. Chou, R. J. E. van den Bijgaart, N. Kong, G. Efe, C. Maynard, D. Talmi-Frank, I. Solomonov, C. Koopman, E. Hadler-Olsen, M. Headley, C. Lin, C.-Y. Wang, I. Sagi, Z. Werb* & V. Plaks* (2019). MMP9 modulates the metastatic cascade and immune landscape for breast cancer anti-metastatic therapy. Life Sci Alliance. 2(6):  pii: e201800226; [doi.org/10.26508/lsa.201800226]. PMID:31727800; PMCID:PMC6856766.
  50. Sharir, A., Marangoni, P., Zilionis, R. et al. A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage. Nat Cell Biol 21, 1102–1112 (2019). [https://doi.org/10.1038/s41556-019-0378-2].
  51. Alex J. Hughes, Hikaru Miyazaki, Maxwell C. Coyle, et al. “Engineered Tissue Folding by Mechanical Compaction of the Mesenchyme.” Developmental Cell 44, 1–14, January 22, 2018. [doi:10.1016/j.devcel.2017.12.004].
  52. Krummel MF, Mahale JN, Uhl LFK, Hardison EA, Mujal AM, Mazet JM, Weber RJ, Gartner ZJ, Gérard A. Paracrine costimulation of IFN-γ signaling by integrins modulates CD8 T cell differentiation. Proceedings of the National Academy of Sciences. 2018;115(45):11585–11590. doi:10.1073/pnas.1804556115
  53. Lachowicz-Scroggins, M.E., Gordon, E.D., Wesolowska-Andersen, A. et al. Cadherin-26 (CDH26) regulates airway epithelial cell cytoskeletal structure and polarity. Cell Discov 4, 7 (2018). [https://doi.org/10.1038/s41421-017-0006-x].
  54. Lefrançais E, Mallavia B, Zhuo H, Calfee CS, Looney MR. Maladaptive role of neutrophil extracellular traps in pathogen-induced lung injury. JCI Insight. 2018;3(3):e98178. Published 2018 Feb 8. [doi:10.1172/jci.insight.98178].
  55. Miller CN, Proekt I, von Moltke J, Wells KL, Rajpurkar AR, Wang H, Rattay K, Khan IS, Metzger TC, Pollack JL, et al. Thymic tuft cells promote an IL-4-enriched medulla and shape thymocyte development. Nature. 2018;559(7715):627–631. doi:10.1038/s41586-018-0345-2
  56. Roth TL, Puig-Saus C, Yu R, Shifrut E, Carnevale J, Li PJ, Hiatt J, Saco J, Krystofinski P, Li H, et al. Reprogramming human T cell function and specificity with non-viral genome targeting. Nature. 2018;559(7714):405–409. doi:10.1038/s41586-018-0326-5
  57. Schneider C, O'Leary CE, von Moltke J, et al. A Metabolite-Triggered Tuft Cell-ILC2 Circuit Drives Small Intestinal Remodeling. Cell. 2018;174(2):271‐284.e14. [doi:10.1016/j.cell.2018.05.014].
  58. Woronowicz KC, Gline SE, Herfat ST, Fields AJ, Schneider RA. FGF and TGFβ signaling link form and function during jaw development and evolution. Developmental Biology. 2018;444:S219–S236. (The Neural Crest: 150 years after His’ discovery). [doi:10.1016/j.ydbio.2018.05.002]
  59. Cai E, Marchuk K, Beemiller P, Beppler C, Rubashkin MG, Weaver VM, Gérard A, Liu T-L, Chen B-C, Betzig E, et al. Visualizing dynamic microvillar search and stabilization during ligand detection by T cells. Science. 2017;356(6338):eaal3118. [doi:10.1126/science.aal3118].
  60. Ali N, Zirak B, Rodriguez RS, Pauli ML, Truong H-A, Lai K, Ahn R, Corbin K, Lowe MM, Scharschmidt TC, et al. Regulatory T Cells in Skin Facilitate Epithelial Stem Cell Differentiation. Cell. 2017;169(6):1119-1129.e11. [doi:10.1016/j.cell.2017.05.002]
  61. Lefrançais E, Ortiz-Muñoz G, Caudrillier A, Mallavia B, Liu F, Sayah DM, Thornton EE, Headley MB, David T, Coughlin SR, et al. The lung is a site of platelet biogenesis and a reservoir for haematopoietic progenitors. Nature. 2017;544(7648):105–109. [doi:10.1038/nature21706].
  62. Myers DR, Lau T, Markegard E, et al. Tonic LAT-HDAC7 Signals Sustain Nur77 and Irf4 Expression to Tune Naive CD4 T Cells. Cell Rep. 2017;19(8):1558‐1571. [doi:10.1016/j.celrep.2017.04.076].
  63. Roy S, Leidal AM, Ye J, Ronen SM, Debnath J. Autophagy-Dependent Shuttling of TBC1D5 Controls Plasma Membrane Translocation of GLUT1 and Glucose Uptake. Molecular Cell. 2017;67(1):84-95.e5. [doi:10.1016/j.molcel.2017.05.020]
  64. Smith AJ, Yao X, Dix JA, Jin BJ, Verkman AS. “Test of the 'glymphatic' hypothesis demonstrates diffusive and aquaporin-4-independent solute transport in rodent brain parenchyma.” Elife. 2017 Aug 21;6. [doi:10.7554/eLife.27679].
  65. Vercoulen Y, Kondo Y, Iwig JS, et al. A Histidine pH sensor regulates activation of the Ras-specific guanine nucleotide exchange factor RasGRP1. Elife. 2017;6:e29002. Published 2017 Sep 27. [doi:10.7554/eLife.29002].
  66. Wong PT, Roberts EW1, Tang S, Mukherjee J, Cannon J, Nip AJ, Corbin K, Krummel MF, Choi SK. “Control of an Unusual Photo-Claisen Rearrangement in Coumarin Caged Tamoxifen through an Extended Spacer.” ACS Chem Biol. 2017 Apr 21;12(4):1001-1010. [doi:10.1021/acschembio.6b00999].
  67. Xi Y, Kim T, Brumwell AN, Driver IH, Wei Y, Tan V, Jackson JR, Xu J, Lee D-K, Gotts JE, et al. Local lung hypoxia determines epithelial fate decisions during alveolar regeneration. Nature Cell Biology. 2017;19(8):904–914. [doi:10.1038/ncb3580]
  68. Arora R, Fries A, Oelerich K, Marchuk K, Sabeur K, Giudice LC, Laird DJ. Insights from imaging the implanting embryo and the uterine environment in three-dimensions. Development. 2016 Jan 1:dev.144386. [doi:10.1242/dev.144386].
  69. Gordon ED, Simpson LJ, Rios CL, Ringel L, Lachowicz-Scroggins ME, Peters MC, Wesolowska-Andersen A, Gonzalez JR, MacLeod HJ, Christian LS, Yuan S, Barry L, Woodruff PG, Ansel KM, Nocka K, Seibold MA, Fahy JV. “Alternative splicing ofinterleukin-33 and type 2 inflammation in asthma.” Proc Natl Acad Sci U S A. 2016  Aug 2;113(31):8765-70. [doi:10.1073/pnas.1601914113].
  70. Johnston, Michael J., Shaked Bar-Cohen, Ze ’ev Paroush, and Todd G. Nystul. 2016. “Phosphorylated Groucho Delays Differentiation in the Follicle Stem Cell Lineage by Providing a Molecular Memory of EGFR Signaling in the Niche.” Development 143 (24):4631–42. [doi: 10.1242/dev.143263].
  71. Kenific CM, Stehbens SJ, Goldsmith J, Leidal AM, Faure N, Ye J, Wittmann T, Debnath J. NBR1 enables autophagy-dependent focal adhesion turnover. Journal of Cell Biology. 2016;212(5):577–590. [doi:10.1083/jcb.201503075]
  72. Lefrançais, Emma, Beñat Mallavia, and Mark R. Looney. 2016. “Lung Imaging in Animal Models.” In Acute Lung Injury and Repair, edited by Lynn M. Schnapp and Carol Feghali-Bostwick, 107–32. Respiratory Medicine. Springer International Publishing. [doi:10.1007/978-3-319-46527-2_8].
  73. Mujal, Adriana M., Julia K. Gilden, Audrey Gérard, Makoto Kinoshita, and Matthew F. Krummel. 2016. “A Septin Requirement Differentiates Autonomous- and Contact-Facilitated T Cell Proliferation.” Nature Immunology 17 (3): 315–22. [doi:10.1038/ni.3330].
  74. Pinkard, Henry, Kaitlin Corbin, and Matthew F. Krummel. 2016. “Spatiotemporal Rank Filtering Improves Image Quality Compared to Frame Averaging in 2-Photon Laser Scanning Microscopy.” PLOS ONE 11 (3): e0150430. [doi:10.1371/journal.pone.0150430].
  75. Pinkard, Henry, Nico Stuurman, Kaitlin Corbin, Ronald Vale, and Matthew F. Krummel. 2016. “Micro-Magellan: Open-Source, Sample-Adaptive, Acquisition Software for Optical Microscopy.” Nature Methods 13 (10): 807–9. [doi:10.1038/nmeth.3991].
  76. Sen, Debasish, Stephen M. Jones, Erin M. Oswald, Henry Pinkard, Kaitlin Corbin, and Matthew F. Krummel. 2016. “Tracking the Spatial and Functional Gradient of Monocyte-To-Macrophage Differentiation in Inflamed Lung.” PLOS ONE 11 (10): e0165064. [doi:10.1371/journal.pone.0165064].
  77. Takai, K., A. Le, V. M. Weaver & Z. Werb (2016). Targeting the cancer-associated fibroblasts as a treatment in triple-negative breast cancer. Oncotarget. 7:82889-82901 (Epub ahead of print Oct. 14). PMID: 27756881; PMCID: [PMC5341254].
  78. Ulmschneider, Bryne, Bree K. Grillo-Hill, Marimar Benitez, Dinara R. Azimova, Diane L. Barber, and Todd G. Nystul. 2016. “Increased Intracellular pH Is Necessary for Adult Epithelial and Embryonic Stem Cell Differentiation.” J Cell Biol 215 (3):345–55. [doi:10.1083/jcb.201606042].
  79. Bickler PE, Clark JP, Gabatto P, Brosnan H. Hypoxic preconditioning and cell death from oxygen/glucose deprivation co-opt a subset of the unfolded protein response in hippocampal neurons. Neuroscience. 2015;310:306–321. doi:10.1016/j.neuroscience.2015.09.021
  80. Bose, Oishee, Peter Baluk, Mark R. Looney, Laurence E. Cheng, Donald M. McDonald, George H. Caughey, and Matthew F. Krummel. 2015. “Mast Cells Present Protrusions into Blood Vessels upon Tracheal Allergen Challenge in Mice.” PLoS ONE 10 (3). [doi:10.1371/journal.pone.0118513].
  81. Cassereau, Luke, Yekaterina A. Miroshnikova, Guanqing Ou, Johnathon Lakins, and Valerie M. Weaver. 2015. “A 3D Tension Bioreactor Platform to Study the Interplay between ECM Stiffness and Tumor Phenotype.” Journal of Biotechnology 193 (January): 66–69. [doi:10.1016/j.jbiotec.2014.11.008].
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