The BIDC is available by appointment for questions and help with your data. Please contact [email protected].
We are open to working with you on long-term projects that may require multiple meetings and collaboration. Visit us if you think you may have a tough nut to crack!
Examples of On-Going Projects Include:
- Profiling the spatial organization of immune cells across tumor microenvironments (ImmunoProfiler Initiative).
- Relating single-cell shape to location within developing tissue (Klein and Green Lab).
- Pixel classification segmentation of kidney structures and the spatial relationship with immune cells (Laszik Lab).
Examples of Previous Projects Include:
- Characterizing the spatial distribution of germ cells in mouse ovaries using Imaris and Matlab (Laird Lab).
- Creating an automated way to measure the polar and azimuthal angles made between the ovarian glands and lumen of mouse ovaries using Imaris and Matlab (Laird Lab).
- Characterizing the spatial distribution of multiple sets of the lung cells with relation to each other (Molofsky Lab).
- Characterizing the spatial relationship between Tcells and vasculature in the pancreas using Arivis and Python/Matlab (Krummel Lab).
- Determining the 3D relationship of protein distribution on a live cell surface (Krummel Lab).