Publications

Since the BIDC's inception, we have contributed to over 180 peer-reviewed publications. If you have utilized BIDC resources (microscopes, analysis, expertise), please submit the publication to [email protected] to be included in our list. 

 

  • Northey JJ, Hayward M-K, Yui Y, Stashko C, Kai F, Mouw JK, Thakar D, Lakins JN, Ironside AJ, Samson S, et al. Mechanosensitive hormone signaling promotes mammary progenitor expansion and breast cancer risk. Cell Stem Cell. 2024;31(1):106-126.e13. [doi:10.1016/j.stem.2023.12.002]

See More 2024 Publications

 

  • Bai Y, Wang Y, Kang M, Gabe CM, Srirangapatanam S, Edwards A, Stoller M, Green SJ, Aloni S, Tamura N, et al. Organic Matrix Derived from Host–Microbe Interplay Contributes to Pathological Renal Biomineralization. ACS Nanoscience Au. 2023;3(4):335–346. [http://doi:10.1021/acsnanoscienceau.2c00060]
  • Zagorulya M, Yim L, Morgan DM, Edwards A, Torres-Mejia E, Momin N, McCreery CV, Zamora IL, Horton BL, Fox JG, et al. Tissue-specific abundance of interferon-gamma drives regulatory T cells to restrain DC1-mediated priming of cytotoxic T cells against lung cancer. Immunity. 2023;56(2):386-405.e10. [doi:10.1016/j.immuni.2023.01.010]

See More 2023 Publications

 

  • Beppler C, Eichorst J, Marchuk K, Cai E, Castellanos CA, Sriram V, Roybal KT, Krummel MF. Hyperstabilization of T cell microvilli contacts by chimeric antigen receptors. Journal of Cell Biology. 2022;222(3):e202205118. [doi:10.1083/jcb.202205118]
  • Rusu I, Mennillo E, Bain JL, Li Z, Sun X, Ly KM, Rosli YY, Naser M, Wang Z, Advincula R, et al. Microbial signals, MyD88, and lymphotoxin drive TNF-independent intestinal epithelial tissue damage. The Journal of Clinical Investigation. 2022;132(5).[doi:10.1172/JCI154993]

See More 2022 Publications

 

  • You R, Artichoker J, Fries A, Edwards AW, Combes AJ, Reeder GC, Samad B, Krummel MF. Active surveillance characterizes human intratumoral T cell exhaustion. The Journal of Clinical Investigation. 2021;131(18). [doi:10.1172/JCI144353].
  • Pipathsouk A, Brunetti RM, Town JP, Graziano BR, Breuer A, Pellett PA, Marchuk K, Tran N-HT, Krummel MF, Stamou D, et al. The WAVE complex associates with sites of saddle membrane curvature. Journal of Cell Biology. 2021;220(8):e202003086. [doi:10.1083/jcb.202003086]

See More 2021 Publications

 

  • Hu KH, Eichorst JP, McGinnis CS, Patterson DM, Chow ED, Kersten K, Jameson SC, Gartner ZJ, Rao AA, Krummel MF. ZipSeq: barcoding for real-time mapping of single cell transcriptomes. Nature Methods. 2020;17(8):833–843. [doi:10.1038/s41592-020-0880-2]
  • Boissonnas A, Louboutin F, Laviron M, Loyher P-L, Reboussin E, Barthelemy S, Réaux-Le Goazigo A, Lobsiger CS, Combadière B, Mélik Parsadaniantz S, et al. Imaging resident and recruited macrophage contribution to Wallerian degeneration. Journal of Experimental Medicine. 2020;217(11):e20200471. [doi:10.1084/jem.20200471]

See More 2020 Publications

 

  • Cleary, Simon J. and Hobbs, Carl and Amison, Richard T. and Arnold, Stephanie and O’Shaughnessy, Blaze G. and Lefrançais, Emma and Mallavia, Beñat and Looney, Mark R. and Page, Clive P. and Pitchford, Simon C. “LPS-induced Lung Platelet Recruitment Occurs Independently from Neutrophils, PSGL-1, and P-Selectin” American Journal of Respiratory Cell and Molecular Biology. 61(2). 232-243. 2019. [DOI: 10.1165/rcmb.2018-0182OC].
  • Dahlgren MW, Jones SW, Cautivo KM, et al. "Adventitial Stromal Cells Define Group 2 Innate Lymphoid Cell Tissue Niches." Immunity. 2019;50(3):707‐722.e6. [doi:10.1016/j.immuni.2019.02.002].

See More 2019 Publications

 

  • Alex J. Hughes, Hikaru Miyazaki, Maxwell C. Coyle, et al. “Engineered Tissue Folding by Mechanical Compaction of the Mesenchyme.” Developmental Cell 44, 1–14, January 22, 2018. [doi:10.1016/j.devcel.2017.12.004].
  • Lachowicz-Scroggins, M.E., Gordon, E.D., Wesolowska-Andersen, A. et al. Cadherin-26 (CDH26) regulates airway epithelial cell cytoskeletal structure and polarity. Cell Discov 4, 7 (2018). [https://doi.org/10.1038/s41421-017-0006-x].

See More 2018 Publications

 

  • Cai E, Marchuk K, Beemiller P, Beppler C, Rubashkin MG, Weaver VM, Gérard A, Liu T-L, Chen B-C, Betzig E, et al. Visualizing dynamic microvillar search and stabilization during ligand detection by T cells. Science. 2017;356(6338):eaal3118. [doi:10.1126/science.aal3118].
  • Ali N, Zirak B, Rodriguez RS, Pauli ML, Truong H-A, Lai K, Ahn R, Corbin K, Lowe MM, Scharschmidt TC, et al. Regulatory T Cells in Skin Facilitate Epithelial Stem Cell Differentiation. Cell. 2017;169(6):1119-1129.e11. [doi:10.1016/j.cell.2017.05.002]

​​​See More 2017 Publications

 

  • Mujal, Adriana M., Julia K. Gilden, Audrey Gérard, Makoto Kinoshita, and Matthew F. Krummel. 2016. “A Septin Requirement Differentiates Autonomous- and Contact-Facilitated T Cell Proliferation.” Nature Immunology 17 (3): 315–22.[doi:10.1038/ni.3330].
  • Ulmschneider, Bryne, Bree K. Grillo-Hill, Marimar Benitez, Dinara R. Azimova, Diane L. Barber, and Todd G. Nystul. 2016. “Increased Intracellular pH Is Necessary for Adult Epithelial and Embryonic Stem Cell Differentiation.” J Cell Biol 215 (3):345–55. [doi:10.1083/jcb.201606042].

​See More 2016 Publications

 

  • Hashimoto, Mitsuo, Haruhiko Yanagisawa, Shunsuke Minagawa, Debasish Sen, Royce Ma, Lynne A. Murray, Ping Tsui, et al. 2015. “TGF-β–Dependent Dendritic Cell Chemokinesis in Murine Models of Airway Disease.” The Journal of Immunology 195 (3): 1182–90. [doi:10.4049/jimmunol.1500348].
  • Hashimoto, Mitsuo, Haruhiko Yanagisawa, Shunsuke Minagawa, Debasish Sen, Amanda Goodsell, Royce Ma, Catherine Moermans, et al. 2015. “A Critical Role for Dendritic Cells in the Evolution of IL-1β–Mediated Murine Airway Disease.” The Journal of Immunology 194 (8): 3962–69. [doi:10.4049/jimmunol.1403043​

See More 2015 Publications

 

  • Van Dyken, Steven J., Alexander Mohapatra, Jesse C. Nussbaum, Ari B. Molofsky, Emily E. Thornton, Steven F. Ziegler, Andrew N. J. McKenzie, Matthew F. Krummel, Hong-Erh Liang, and Richard M. Locksley. 2014. “Chitin Activates Parallel Immune Modules That Direct Distinct Inflammatory Responses via Innate Lymphoid Type 2 and Γδ T Cells.” Immunity 40 (3): 414–24. [doi:10.1016/j.immuni.2014.02.003].
  • Patnode, Michael L., Jennifer K. Bando, Matthew F. Krummel, Richard M. Locksley, and Steven D. Rosen. 2014. “Leukotriene B4 Amplifies Eosinophil Accumulation in Response to Nematodes.” Journal of Experimental Medicine 211 (7): 1281–88. [doi:10.1084/jem.20132336].

​See More 2014 Publications

 

  • Nussbaum, Jesse C., Steven J. Van Dyken, Jakob von Moltke, Laurence E. Cheng, Alexander Mohapatra, Ari B. Molofsky, Emily E. Thornton, et al. 2013. “Type 2 Innate Lymphoid Cells Control Eosinophil Homeostasis.” Nature 502 (7470): 245–48. [doi:10.1038/nature12526].
  • Jacobelli, Jordan, Miriam Estin Matthews, Stephanie Chen, and Matthew F. Krummel. 2013. “Activated T Cell Trans-Endothelial Migration Relies on Myosin-IIA Contractility for Squeezing the Cell Nucleus through Endothelial Cell Barriers.” PLOS ONE 8 (9): e75151. [doi:10.1371/journal.pone.0075151].

​​See More 2013 Publications 

 

  • Phillips, Joanna J., Emmanuelle Huillard, Aaron E. Robinson, Anna Ward, David H. Lum, Mei-Yin Polley, Steven D. Rosen, David H. Rowitch, and Zena Werb. 2012. “Heparan Sulfate Sulfatase SULF2 Regulates PDGFRα Signaling and Growth in Human and Mouse Malignant Glioma.” The Journal of Clinical Investigation 122 (3): 911–22. [doi:10.1172/JCI58215].
  • Gilden, Julia K., Sebastian Peck, Yi-Chun M. Chen, and Matthew F. Krummel. 2012. “The Septin Cytoskeleton Facilitates Membrane Retraction during Motility and Blebbing.” J Cell Biol 196 (1): 103–14. [doi:10.1083/jcb.201105127].

​See More 2012 Publications

 

  • Lemieux, George A., Jason Liu, Nasima Mayer, Roland J. Bainton, Kaveh Ashrafi, and Zena Werb. 2011. “A Whole-Organism Screen Identifies New Regulators of Fat Storage.” Nature Chemical Biology 7 (4): 206–13. [doi:10.1038/nchembio.534].
  • Slorach, Euan M., Jonathan Chou, and Zena Werb. 2011. “Zeppo1 Is a Novel Metastasis Promoter That Represses E-Cadherin Expression and Regulates p120-Catenin Isoform Expression and Localization.” Genes & Development 25 (5): 471–84. [doi:10.1101/gad.1998111].

​See More 2011 Publications

 

  • Radoshevich, Lilliana, Lyndsay Murrow, Nan Chen, Estefania Fernandez, Srirupa Roy, Christopher Fung, and Jayanta Debnath. 2010. “ATG12 Conjugation to ATG3 Regulates Mitochondrial Homeostasis and Cell Death.” Cell 142 (4): 590–600. [doi:10.1016/j.cell.2010.07.018].
  • Jacobelli, Jordan, Rachel S. Friedman, Mary Anne Conti, Ana-Maria Lennon-Dumenil, Matthieu Piel, Caitlin M. Sorensen, Robert S. Adelstein, and Matthew F. Krummel. 2010. “Confinement-Optimized 3-Dimensional T Cell Amoeboid Motility Is Modulated via Myosin IIA-Regulated Adhesions.” Nature Immunology 11 (10): 953–61. [doi:10.1038/ni.1936].​

See More 2010 Publications

 

  • Youn, Yong Ha, Tiziano Pramparo, Shinji Hirotsune, and Anthony Wynshaw-Boris. 2009. “Distinct Dose-Dependent Cortical Neuronal Migration and Neurite Extension Defects in Lis1 and Ndel1 Mutant Mice.” Journal of Neuroscience 29 (49): 15520–30. [doi:10.1523/JNEUROSCI.4630-09.2009].
  • Melli, Kristin, Rachel S. Friedman, Ashley E. Martin, Erik B. Finger, Gang Miao, Gregory L. Szot, Matthew F. Krummel, and Qizhi Tang. 2009. “Amplification of Autoimmune Response through Induction of Dendritic Cell Maturation in Inflamed Tissues.” The Journal of Immunology 182 (5): 2590–2600. [doi:10.4049/jimmunol.0803543].

​See More 2009 Publications

 

  • Gardner, James M., Jason J. DeVoss, Rachel S. Friedman, David J. Wong, Ying X. Tan, Xuyu Zhou, Kellsey P. Johannes, et al. 2008. “Deletional Tolerance Mediated by Extrathymic Aire-Expressing Cells.” Science 321 (5890): 843–47. [doi:10.1126/science.1159407].
  • Allen, Christopher D C, and Jason G Cyster. 2008. “Follicular Dendritic Cell Networks of Primary Follicles and Germinal Centers: Phenotype and Function.” Seminars in Immunology 20 (1): 14–25. [doi:10.1016/j.smim.2007.12.001].

​See More 2008 Publications

 

  • Allen, Christopher D. C., Takaharu Okada, H. Lucy Tang, and Jason G. Cyster. 2007. “Imaging of Germinal Center Selection Events During Affinity Maturation.” Science 315 (5811): 528–31. [doi:10.1126/science.1136736].
  • Woolf, Eilon, Irina Grigorova, Adi Sagiv, Valentin Grabovsky, Sara W. Feigelson, Ziv Shulman, Tanja Hartmann, Michael Sixt, Jason G. Cyster, and Ronen Alon. 2007. “Lymph Node Chemokines Promote Sustained T Lymphocyte Motility without Triggering Stable Integrin Adhesiveness in the Absence of Shear Forces.” Nature Immunology 8 (10): 1076–85. [doi:10.1038/ni1499].

 

  • Tang, Qizhi, and Matthew F Krummel. 2006. “Imaging the Function of Regulatory T Cells in Vivo.” Current Opinion in Immunology, Host–pathogen interactions / Immunological techniques, 18 (4): 496–502. [doi:10.1016/j.coi.2006.05.007].
  • Tang, Qizhi, Jason Y. Adams, Aaron J. Tooley, Mingying Bi, Brian T. Fife, Pau Serra, Pere Santamaria, Richard M. Locksley, Matthew F. Krummel, and Jeffrey A. Bluestone. 2006. “Visualizing Regulatory T Cell Control of Autoimmune Responses in Nonobese Diabetic Mice.” Nature Immunology 7 (1): 83–92. [doi:10.1038/ni1289].

 

  • Friedman, Rachel S., Jordan Jacobelli, and Matthew F. Krummel. 2005. “Mechanisms of T Cell Motility and Arrest: Deciphering the Relationship between Intra- and Extracellular Determinants.” Seminars in Immunology 17 (6): 387–99. [doi:10.1016/j.smim.2005.09.006].
  • Okada, Takaharu, Mark J Miller, Ian Parker, Matthew F Krummel, Margaret Neighbors, Suzanne B Hartley, Anne O’Garra, Michael D Cahalan, and Jason G Cyster. 2005. “Antigen-Engaged B Cells Undergo Chemotaxis toward the T Zone and Form Motile Conjugates with Helper T Cells.” PLoS Biology 3 (6). [doi:10.1371/journal.pbio.0030150].