The Micro-Magellan plugin allows flexible, dynamic device control and acquisition. Explor acquisitions enable navigation of samples in XY and Z, to build a 3D map of sample quickly and with minimal photobleaching. Surfaces allows you to define an non-cuboidal region of interest and define sample morphology, which can then be used to define sample-driven parameters such as laser power at distance from surface. Using grids or surfaces, you can designate multiple areas to image in a single acquisition in series or in parallel.
User Guide
More µMagellan information and downloadable content on GitHub.