Fiji Batch Macro Skeleton

This macro is designed to batch process custom user defined functions. The user will choose the source directory containing all of their images as well as an output directory to place the final processed images. This macro is a skeleton with the intent of having the user write in the code to process their images. Please see the attached example PDF.


Executing the XTension     
  • Open Fiji. 
  • Plugins >Macros > Run...  
  • Choose this text file.      

For a list of built-in macro functions click the link below: