The Fiji plugin, Imaricumpiler, is a utility to stitch together gridded fields of view from Micromanager's Magellan.
Dependencies
- Fiji (Fiji Is Just ImageJ)
Installation
- Download Fiji from site.
- Download Imaric_Mpiler.jar and Magellan.jar from GitHub.
- Copy the two .jar files into the Fiji.app/plugins folder.
- Open FIJI. Perform necessary updates.
- ImaricμMpiler should now appear in the plugins drop-down menu.
Executing the Imaricumpiler Plugin
- Select Imaricumpiler from the Fiji plugins drop-down menu.
- Drag and drop your Magellan image folder into the Imaricumpiler GUI.
- Select either 'Output to Fiji Window' or 'Save as Imaris File' and click 'Start!'
